In the web server page, you can either enter choose Download from RCSB and enter the PDB code or choose Upload PDB file and upload your own PDB file. The PDB file you upload must be in the standard PDB file format.
If you enter an e-mail address, a link to the results will be sent to you as soon as the job finishes.
In the chain selection page, you can choose one or more chains for subunit 1 and one or more chains for subunit 2. A multimer example is given below. Please note that the minimum distance between alpha carbons of the subunits should be less than 7 Å.
In the results page; you can either
- click on X under Show on JMol column to display the anchor and the anchoring groove residues on the JSMol figure
- click on Slowest Mode to display the cross-correlations of residues in the slowest mode on the right pane and the 3-D representation (colored based on the cross-correlations) on the left pane. The same is valid for the Second Slowest Mode.
- click on Average two slowest modes / Average ten slowest modes / All modes to view the cross-correlations in the average two slowest modes, average ten slowest modes and all modes, respectively.
click on Dynamic Structural Domains link to view the domains in the slowest and second slowest modes.